Young-Dan Cho, Eunae Sandra Cho, Je Seon Song, Young-Youn Kim, Inseong Hwang, and Sun-Young Kim. Standard operating procedures for the collection, processing, and storage of oral biospecimens at the Korea Oral Biobank Network. J Periodontal Implant Sci. 2023 Feb;53(1)

Keun-Soo Ryoo, Pil-Jong Kim, Sungtae Kim, Young-Dan Cho, and Young Ku. A retrospective study of the long-term survival of RESTORE® dental implants with resorbable blast media surface. J Periodontal Implant Sci. 2023 Apr; 53(2)

Han HS, Yum H, Cho YD, Kim S. Improvement of halitosis by probiotic bacterium Weissella cibaria CMU: A randomized controlled trial. Frontiers in microbiology 2023;14:1108762.

Maekawa S, Cho YD, Kauffmann F, Yao Y, Sugai JV, Zhong X, Schmiedeler C, Kinra N, Moy A, Larsson L et al. (2022). Bmp gene-immobilization to dental implants enhances bone regeneration. Adv Mater Interfaces. 9(22).

Han HS, Kim PJ, Kim KT, Kim S, Ku Y, Cho YD. (2022). Dental implant proximity to adjacent teeth: A retrospective study. Clin Implant Dent Relat Res. 2022;24:733-739.

Kim WJ, Cho YD, Ku Y, Ryoo HM. (2022). The worldwide patent landscape of dental implant technology. Biomaterials research. 26(1):59.

Kim HJ, Kim WJ, Shin HR, et al. ROS-induced PADI2 downregulation accelerates cellular senescence via the stimulation of SASP production and NFkappaB activation. Cell Mol Life Sci. 2022;79(3):155.

Cho, Y. D., Namgung, D. J., Kim, K. H., Kim, S., Seol, Y. J., Lee, Y. M., & Ku, Y. (2022). Long-Term Human Histologic Evaluation of Sinus Bone Augmentation and Simultaneous Implant Placement. International Journal of Periodontics and Restorative Dentistry, 42(1), 93-100. doi:10.11607/prd.4965

Asa'ad F, Cho YD, Larsson L. Editorial: On the Inflammatory Cascade-From Bacteria Through the Epithelium to the Connective Tissue. Front Cell Infect Mi. 2022;12.

Cho, Y. D., Kim, W. J., Ryoo, H. M., & Ku, Y. (2021). Patent landscape report on dental implants: A technical analysis. Clinical Implant Dentistry and Related Research. doi:10.1111/cid.13048, 2021 Dec;23(6):857-863.

Cho, Y.D., Kim, ST, Ku Y. (2021) Effectiveness of dental implantation with the partial split-flap technique on vertical guided bone regeneration: a retrospective study. J Periodontal Implant Sci. 2021 Dec; 51(6): 433–443.

Yoon, H.; Kim, H.J.; Shin, H.R.; Kim, B.S.; Kim, W.J.; Cho, Y.D.; Ryoo, H.M. Nicotinamide Improves Delayed Tooth Eruption in Runx2(+/-) Mice. J. Dent. Res. 2021, 100, 423-431, doi:10.1177/0022034520970471.

Kim, B.S.; Shin, H.R.; Kim, H.J.; Yoon, H.; Cho, Y.D.; Choi, K.Y.; Choi, J.Y.; Kim, W.J.; Ryoo, H.M. Septal chondrocyte hypertrophy contributes to midface deformity in a mouse model of Apert syndrome. Sci. Rep. 2021, 11, 7979, doi:10.1038/s41598-021-87260-5.

Cho, Y.-D.; Kim, K.-H.; Lee, Y.-M.; Ku, Y.; Seol, Y.-J. Oral Microbiome and Host Health: Review on Current Advances in Genome-Wide Analysis. Applied Sciences 2021, 11, 4050.

Cho, Y.D.; Kim, W.J.; Ryoo, H.M.; Kim, H.G.; Kim, K.H.; Ku, Y.; Seol, Y.J. Current advances of epigenetics in periodontology from ENCODE project: a review and future perspectives. Clin. Epigenetics 2021, 13, 92, doi:10.1186/s13148-021-01074-w.

Cho, Y.D.; Kim, W.J.; Kim, S.; Ku, Y.; Ryoo, H.M. Surface Topography of Titanium Affects Their Osteogenic Potential through DNA Methylation. Int J Mol Sci 2021, 22, doi:10.3390/ijms22052406.

Yoon, H.; Kim, H.J.; Shin, H.R.; Kim, B.S.; Kim, W.J.; Cho, Y.D.; Ryoo, H.M. Nicotinamide Improves Delayed Tooth Eruption in Runx2(+/-) Mice. J. Dent. Res. 2020, 10.1177/0022034520970471, 22034520970471, doi:10.1177/0022034520970471.

Kim, W.J.; Kim, B.S.; Kim, H.J.; Cho, Y.D.; Shin, H.L.; Yoon, H.I.; Lee, Y.S.; Baek, J.H.; Woo, K.M.; Ryoo, H.M. Intratesticular Peptidyl Prolyl Isomerase 1 Protein Delivery Using Cationic Lipid-Coated Fibroin Nanoparticle Complexes Rescues Male Infertility in Mice. Acs Nano 2020, 14, 13217-13231, doi:10.1021/acsnano.0c04936.

Cho YD, Kim BS, Kim WJ, Kim HJ, Baek JH, Woo KM, Seol YJ, Ku Y, Ryoo HM. 2020a. Histone acetylation together with DNA demethylation empowers higher plasticity in adipocytes to differentiate into osteoblasts. Gene. 733:144274.

Cho YD, Kim PJ, Kim HG, Seol YJ, Lee YM, Ryoo HM, Ku Y. 2020b. Transcriptome and methylome analysis of periodontitis and peri-implantitis with tobacco use. Gene. 727:144258.

Jo DW, Cho YD, Seol YJ, Lee YM, Lee HJ, Kim YK. 2019. A randomized controlled clinical trial evaluating efficacy and adverse events of different types of recombinant human bone morphogenetic protein-2 delivery systems for alveolar ridge preservation. Clin Oral Implants Res. 30(5):396-409.

Kim B, Shin H, Kim W, Kim H, Cho Y, Yoon H, Baek J, Woo K, Lee Y, Ryoo H. 2020. Pin1 attenuation improves midface hypoplasia in a mouse model of apert syndrome. J Dent Res. 99(2):223-232.

Cho YD, Kim KH, Ryoo HM, Lee YM, Ku Y, Seol YJ. Recent Advances of Useful Cell Sources in the Periodontal Regeneration. Curr Stem Cell Res Ther 2019;14:3-8.

Yu N, Nguyen T, Cho YD, Kavanagh NM, Ghassib I, Giannobile WV. Personalized scaffolding technologies for alveolar bone regenerative medicine. Orthod Craniofac Res 2019;22 Suppl 1:69-75.

Cho YD, Seol YJ, Lee YM, Heo SJ, Ku Y. Immediate Implant Placement at a Periapical Lesion Site: A Case Series. J Oral Implantol. 2018;44(4):281-286.

Cho YD, Ryoo HM. Trans-differentiation via Epigenetics: A New Paradigm in the Bone Regeneration. J Bone Metab 2018;25:9-13.

Cho YD, Ku Y. Guided bone regeneration using K-incision technique. J Periodontal Implant Sci. 2018;48(3):193-200.

Rahman SU, Oh JH, Cho YD, et al. Fibrous Topography-Potentiated Canonical Wnt Signaling Directs the Odontoblastic Differentiation of Dental Pulp-Derived Stem Cells. ACS applied materials & interfaces. 2018;10(21):17526-17541.

Hein AT, Cho YD, Jo YH, Kim DJ, Han JS. Analysis of osteogenic potential on 3mol% yttria-stabilized tetragonal zirconia polycrystals and two different niobium oxide containing zirconia ceramics. The journal of advanced prosthodontics. 2018;10(2):147-154.

Shin HR, Bae HS, Cho YD, et al. PIN1 is a new therapeutic target of craniosynostosis. Hum Mol Genet. 2018.

Kim WJ, Kim BS, Cho YD, et al. Efficiency data of intracellular recombinant protein delivery using cationic lipid coated silk fibroin particle. Data Brief. 2017;13:683-691.

Kim WJ, Kim BS, Cho YD, et al. Fibroin particle-supported cationic lipid layers for highly efficient intracellular protein delivery. Biomaterials. 2017;122:154-162.

Kim WJ, Islam R, Kim BS, Cho YD, et al. Direct Delivery of Recombinant Pin1 Protein Rescued Osteoblast Differentiation of Pin1-Deficient Cells. J Cell Physiol. 2017;232(10):2798-2805.

Cho YD, Seol YJ, Lee YM, Rhyu IC, Ryoo HM, Ku Y. An Overview of Biomaterials in Periodontology and Implant Dentistry. Adv Mater Sci Eng. 2017.

Cho YD, Lee JE, Chung Y, et al. Collaborative Management of Combined Periodontal-endodontic Lesions with a Palatogingival Groove: A Case Series. J Endod. 2017;43(2):332-337.

Cho YD, Kim PJ, Kim HG, et al. Transcriptomics and methylomics in chronic periodontitis with tobacco use: a pilot study. Clin Epigenetics. 2017;9:81.

Cho YD, Kim BS, Lee CS, et al. Fibronectin-Derived Oligopeptide Stimulates Osteoblast Differentiation Through a Bone Morphogenic Protein 2-Like Signaling Pathway. J Periodontol. 2017;88(2):e42-e48.

Cho YD, Kim BS, Bae HS, et al. Direct gingival fibroblast/osteoblast transdifferentiation via epigenetics. J Dent Res. 2017;96(5):555-561.

Bae HS, Yoon WJ, Cho YD, et al. An HDAC Inhibitor, Entinostat/MS-275, Partially Prevents Delayed Cranial Suture Closure in Heterozygous Runx2 Null Mice. J Bone Miner Res. 2017;32(5):951-961.

Cho YD, Kim SJ, Bae HS, Yoon WJ, Kim KH, Ryoo HM, Seol YJ, Lee YM, Rhyu IC, and Ku Y (2016) Biomimetic approach to stimulate osteogenesis on titanium implant surfaces using fibronectin derived oligopeptide. Curr Pharm Des. 22(30), 4729-4735

Cho YD, Kim S, Koo KT, Seol YJ, Lee YM, Rhyu IC, and Ku Y (2016) Rescue of a periodontally compromised tooth by non-surgical treatment: a case report. J Periodontal Implant Sci. 46(2), 128-134

Cho YD, Bae HS, Lee DS, Yoon WJ, Woo KM, Baek JH, Lee G, Park JC, Ku Y, and Ryoo HM (2016) Epigenetic Priming Confers Direct Cell Trans-Differentiation From Adipocyte to Osteoblast in a Transgene-Free State. J Cell Physiol. 231(7), 1484-1494

Shin HR, Islam R, Yoon WJ, Lee TK, Cho YD, Bae HS, Kim BS, Woo KM, Baek JH, and Ryoo HM (2016) Pin1-mediated Modification Prolongs the Nuclear Retention of beta-Catenin in Wnt3a-induced Osteoblast Differentiation. J Biol Chem. 291(11), 5555-5565

Cho YD, Shin JC, Yoon HI, Ku Y, Ryoo HM, Kim DJ, Kim DG, and Han JS (2015) Characterization of Human Gingival Fibroblasts on Zirconia Surfaces Containing Niobium Oxide. Materials. 8(9), 6018-6028

Cho YD, Hong JS, Ryoo HM, Kim DJ, Park JH, and Han JS. (2015) Osteogenic responses to zirconia with hydroxyapatite coating by aerosol deposition. J Dent Res. 94(3), 491-499

Yoon WJ, Islam R, Cho YD, Ryu KM, Shin HR, Woo KM, Baek JH, and Ryoo HM (2015) Pin1 plays a critical role as a molecular switch in canonical BMP signaling. J Cell Physiol. 230(3), 640-647

Cho YD, Yoon WJ, Kim WJ, Woo KM, Baek JH, Lee G, Ku Y, van Wijnen AJ, and Ryoo HM (2014) Epigenetic modifications and canonical wingless/int-1 class (WNT) signaling enable trans-differentiation of nonosteogenic cells into osteoblasts. J Biol Chem. 289(29), 20120-20128

Cho YD, Shin JC, Kim HL, Gerelmaa M, Yoon HI., Ryoo HM, Kim DJ, and Han JS (2014) Comparison of the osteogenic potential of titanium- and modified zirconia-based bioceramics. Int J Mol Sci. 15(3), 4442-4452

Yoon WJ, Cho YD, Kim WJ, Bae HS, Islam R, Woo KM, Baek JH, Bae SC, and Ryoo HM (2014) Prolyl isomerase Pin1-mediated conformational change and subnuclear focal accumulation of Runx2 are crucial for fibroblast growth factor 2 (FGF2)-induced osteoblast differentiation. J Biol Chem. 289(13), 8828-8838

Yoon WJ, Islam R, Cho YD, Woo KM, Baek JH, Uchida T, Komori T, van Wijnen A, Stein JL, Lian JB, Stein GS, Choi JY, Bae SC, and Ryoo HM (2013) Pin1-mediated Runx2 modification is critical for skeletal development. J Cell Physiol. 228(12), 2377-2385

Cho YD, Kim WJ, Yoon WJ, Woo KM, Baek JH, Lee G, Kim GS, and Ryoo HM (2012) Wnt3a stimulates Mepe, matrix extracellular phosphoglycoprotein, expression directly by the activation of the canonical Wnt signaling pathway and indirectly through the stimulation of autocrine Bmp-2 expression. J Cell Physiol. 227(6), 2287-2296

Cho YD, Yoon WJ, Woo KM, Baek JH, Park JC, and Ryoo HM (2010) The canonical BMP signaling pathway plays a crucial part in stimulation of dentin sialophosphoprotein expression by BMP-2. J Biol Chem. 285(47), 36369-36376

Cho YD, Yoon WJ, Woo KM, Baek JH, Lee G, Cho JY, and Ryoo HM (2009) Molecular regulation of matrix extracellular phosphoglycoprotein expression by bone morphogenetic protein-2. J Biol Chem. 284(37), 25230-25240